cc-by-4.0Lilley, Thomas2025-04-292024-05-272024-05-27https://datakatalogi.helsinki.fi/handle/123456789/4463Datasets used in Twort et al: Signals of positive selection in Palearctic bat species coexisting with a fungal pathogen Included are final gene alignments and tree files from the Phylogenetic Dataset (2515 genes) and the curated dataset (300 genes). Phylogenetic Dataset Files: BUSCO Dataset: 2515 genes extracted from the Mammalia_odb10 BUSCO database. This dataset was used for phylogeney construction and branch tests Align_BUSCO: Contains the final cleaned alignments used for the 2515 Phylogenetic dataset genes (after gblocks) in fasta format Contree_BUSCO.zip: Contains the consensus tree constructed with IQ-Tree for the 2,515 phylogenetic gene dataset (used as input for ASTRAL,and for branch tests)   Ufboot_BUSCO.zip: Contains the bootstrap trees from IQ-Tree for the 2,515 gene dataset Branch_Myoluc_labelled_BUSCO.zip: Final labelled trees, with Myotis lucifugus labelled as foreground branch  from the 2,515 gene dataset used for PAML branch tests, all bootstrap values and branch lengths have been removed. Branch_Myomyo_labelled_BUSCO.zip: Final labelled trees, with Myotis myotis labelled as foreground branch  from the 2,515 gene dataset used for PAML branch tests, all bootstrap values and branch lengths have been removed. Curated Dataset Files: PAML Dataset - 300 gene set, This dataset was used for codon tests (PAML) Align_Paml: Contains the final cleaned alignments for the 300 gene dataset (after gblocks) in fasta format Contree_PAML: Contains the consensus trees constructed with IQ-Tree for the 300 gene dataset  Version 2 corrects a sample labelling mistake present in Version 1.dataset