cc-by-4.0Mäklin, Tommi2025-04-292023-11-072023-11-07https://datakatalogi.helsinki.fi/handle/123456789/4878Batch job scripts for analysing CLED plate sweeps from a study in Punjab, Pakistan This upload contains the SLURM batch jobs scripts that were used to analyse WGS data from CLED plate sweeps from a study conducted in Punjab, Pakistan. About Version history v0.1.1 (current version) Added reference to the study. v0.1.0 Added brief description with a few missing parts. Distribution These files are made available under a CC-BY 4.0 license. Citation Khawaja, T., Mäklin, T., Kallonen, T. et al. Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature Communications 15, 5196 (2024). https://doi.org/10.1038/s41467-024-49591-5 Contact Tommi Mäklin <tommi'at'maklin.fi>.workflow