cc-by-4.0Niku, Mikael2025-04-292023-07-052023-07-05https://datakatalogi.helsinki.fi/handle/123456789/4933R markdown notebook containing R scripts used in association analyses of transcriptomics and metabolomics data. Uses R version 4.1.2, phyloseq version 1.38, and microbiome 1.17.2, among smaller packages.RNASeqRNA-seqDESeq2volcano plotmultiomicsmetabolomicstranscriptomicsdata integrationclusteringcorrelationsassociationbioclusteringMulti-omics data integration: exploring associations of transcriptomics and metabolomics data from a germ-free mouse studysoftware