LIPID17 POPC-POPG 50:50 MD simulation, Na+ counterions, 298K

2019-10-28, 2019-10-28
dataset
The last 200ns of a 320ns MD simulation trajectory with Amber lipid 17 force field. POPC:POPG 50:50 (150 POPC, 150 POPG) mixture with Na+ counterions. The starting structure and lipid 17 parameters from here: https://zenodo.org/record/2585523#.Xbf0FC17FBx The starting structure was generated by removing appropriate number of POPC lipids to get 50:50 ratio. Dihedral types are corrected to type 9 as discussed here: https://github.com/NMRLipids/NMRlipidsIVPEandPG/issues/12.