Batch job scripts for analysing CLED plate sweeps from a study in Punjab, Pakistan
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2023-11-07, 2023-11-07
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Description
Batch job scripts for analysing CLED plate sweeps from a study in Punjab, Pakistan
This upload contains the SLURM batch jobs scripts that were used to analyse WGS data from CLED plate sweeps from a study conducted in Punjab, Pakistan.
About
Version history
v0.1.1 (current version)
Added reference to the study.
v0.1.0
Added brief description with a few missing parts.
Distribution
These files are made available under a CC-BY 4.0 license.
Citation
Khawaja, T., Mäklin, T., Kallonen, T. et al. Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature Communications 15, 5196 (2024). https://doi.org/10.1038/s41467-024-49591-5
Contact
Tommi Mäklin <tommi'at'maklin.fi>.