Custom code for: "Sequence determinants of human gene regulatory elements"
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Sahu, B., Hartonen, T., Pihlajamaa, P., Wei, B., Dave, K., Zhu, F., Kaasinen, E., Lidschreiber, K., Lidschreiber, M., Daub, C. O., Cramer, P., Kivioja, T., & Taipale, J. (2021). Custom code for: “Sequence determinants of human gene regulatory elements” (Version 0.1.0). Zenodo. https://doi.org/10.5281/ZENODO.5159644
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This record contains the essential custom code from manuscript:
Sahu, Biswajyoti, et al. "Sequence determinants of human gene regulatory elements." (2021).
The README-files provided with the record describe the code in more detail. The original raw data is deposited to GEO (GEO accession: GSE180158). The final machine learning models used in the manuscript along with their respective training, test and validation data have been deposited to Zenodo (10.5281/zenodo.5101420).
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Gene regulation, STARR-seq, Deep learning, Convolutional neural networks, Machine learning