isONclust3- de novo clustering of large long-read transcriptome datasets

Back to summary metadata
dc.contributor.affiliationStockholm University-Petri, Alexander Juergen
dc.contributor.authorPetri, Alexander Juergen
dc.contributor.roleSahlin, Kristoffer Supervisor
dc.date.accessioned2025-04-29T14:07:26Z
dc.date.issued2025-04-17
dc.date.issued2025-04-17
dc.descriptionA rust implementation of a novel de novo clustering algorithm. isONclust3 is a tool for clustering either PacBio Iso-Seq reads, or Oxford Nanopore reads into clusters, where each cluster represents all reads that came from a gene family. Output is a tsv file with each read assigned to a cluster-ID and a folder 'fastq' containing one fastq file per cluster generated. Detailed information is available in the isONclust3 paper.
dc.identifierhttps://doi.org/10.5281/zenodo.15236591
dc.identifier.urihttps://datakatalogi.helsinki.fi/handle/123456789/6756
dc.rights.licensecc-by-4.0
dc.titleisONclust3- de novo clustering of large long-read transcriptome datasets
dc.typesoftware

Files

Repositories

Zenodo